Table 1 Primers and probes used for diagnostic and phylogenetic analysis

16sU17F

AGAGTTTGATCCTGGCTCAG

56 °C

First

[30]

16sOR1198R

TTTCCTATAGTTCCCGGCATT

56 °C

First & second

16sO79F

ATTAATGCTGAGCTTGCTTAGCAT

56 °C

Second

Otr47_263F

GTGCTAAGAAARGATGATACTTC

54 °C

First

[31]

Otr1780R

AAATCGCCTTTAAACTAGATTTACTTATTA

54 °C

First & second

Otr47F

TAAAGGTTAAGTTTATGAAAAAGGCATTT

54 °C

Second

Otr56_498F

AATTAGTTTAGAATGGTTACCAC

54 °C

First

r56_585F

AATGTCTGCGTTGTCGTTGC

54 °C

Second

r56_2057

TCCACATACACACCTTCAGC

54 °C

First & second

[32]

OtsuFP630

AACTGATTTTATTCAAACTAATGCTGCT

60 °C

Real time

[5]

OtsuRP747

TATGCCTGAGTAAGATACRTGAATRGAATT

60 °C

Real time

[5]

OtsuPR665

6FAM-TGGGTAGCTTTGGTGGACCGATGTTTAATCT-TAMRA

60 °C

Real time

[5]